.. _links:

=====
Links
=====

Bookmarks I use often.

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.. dropdown:: NVIDIA Holoscan
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   - `Holohub <https://nvidia-holoscan.github.io/holohub/>`_
   - `Holoscan SDK <https://developer.nvidia.com/holoscan-sdk>`_
   - `Accelerating ptychography workflows with NVIDIA Holoscan at Diamond Light Source <https://developer.nvidia.com/blog/accelerating-ptychography-workflows-with-nvidia-holoscan-at-diamond-light-source/>`_
   - `Sensor processing on GPU <https://indico.cern.ch/event/1496673/contributions/6656349/attachments/3126030/5544522/Plenary%20-%20Instrumental%20Edge%20-%20Sensor%20Processing%20on%20GPU.pdf>`_


.. dropdown:: Journals
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   - `NVIDIA publication <https://research.nvidia.com/publications>`_
   - `Google publication <https://research.google/pubs/>`_
   - `Nature <https://www.nature.com/nature/research-articles>`_
   - `Nature materials <https://www.nature.com/nmat/research-articles>`_
   - `Nature methods <https://www.nature.com/nmeth/research-articles>`_
   - `Science <https://www.science.org/journal/science/research>`_
   - `arXiv - Image and Video Processing <https://arxiv.org/list/eess.IV/new#item0>`_


.. dropdown:: Blog links
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   - `Anthropic <https://www.anthropic.com/news>`_
   - `Read the Docs Blog <https://docs.readthedocs.com/platform/stable/#>`_
   - `Python Blog <https://www.python.org/blogs/>`_
   - `TechCrunch <https://techcrunch.com/>`_
   - `Google Developer Blog <https://developers.googleblog.com/>`_
   - `NVIDIA News <https://nvidianews.nvidia.com/>`_
   - `NVIDIA Developer Blog <https://developer.nvidia.com/blog/>`_
   - `RAPIDS AI Blog <https://medium.com/rapids-ai>`_
   - `CertLibrary Blog <https://www.certlibrary.com/blog/>`_
   - `Hacker News <https://news.ycombinator.com/>`_
   - `GitHub Blog <https://github.blog/>`_
   - `VS Code Updates <https://code.visualstudio.com/updates>`_
   - `VS Code Blog <https://code.visualstudio.com/blogs>`_
   - `OpenACC <https://www.openacc.org/blog>`_

.. dropdown:: Shortcut links
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   - `GitHub shortcuts <https://docs.github.com/en/get-started/accessibility/keyboard-shortcuts>`__
   - `Outlook shortcuts <https://support.microsoft.com/en-us/topic/keyboard-shortcuts-in-outlook-for-mac-af188485-2c8e-4fcf-a5d2-76bc24edf9d0>`_
   - `Slack <https://slack.com/help/articles/201374536-Slack-keyboard-shortcuts>`_
   - `Brave <https://support.brave.app/hc/en-us/articles/360032272171-What-keyboard-shortcuts-can-I-use-in-Brave>`_
   - `macOS <https://support.apple.com/en-us/102650>`_
   - `Spotlight <https://support.apple.com/guide/mac-help/spotlight-keyboard-shortcuts-mh26783/mac>`_
   - `Visual Studio Code <https://code.visualstudio.com/shortcuts/keyboard-shortcuts-macos.pdf>`_
   - `Visual Studio Code Copilot <https://code.visualstudio.com/docs/copilot/reference/copilot-vscode-features>`_
   - `Warp <https://docs.warp.dev/getting-started/keyboard-shortcuts>`_
   

.. dropdown:: API links
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   - `React API <https://react.dev/reference/react>`_
   - `NumPy <https://numpy.org/doc/stable/reference/index.html>`_
   - `SciPy <https://docs.scipy.org/doc/scipy/reference/>`_
   - `Matplotlib <https://matplotlib.org/stable/contents.html>`_
   - `CuPy <https://docs.cupy.dev/en/stable/reference/index.html>`_
   - `PyTorch <https://pytorch.org/docs/stable/index.html>`_
   - `TensorFlow <https://www.tensorflow.org/api_docs>`_
   - `JAX <https://jax.readthedocs.io/en/latest/index.html>`_
   - `scikit-learn <https://scikit-learn.org/stable/modules/classes.html>`_
   - `pandas <https://pandas.pydata.org/pandas-docs/stable/reference/index.html>`_
   - `WebGPU <https://gpuweb.github.io/gpuweb/>`_
   - `CUDA programming <https://docs.nvidia.com/cuda/cuda-c-programming-guide/contents.html>`_

.. dropdown:: Video links
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   - `Gatan: real-time in-situ insights: Dynamic mapping with 4D STEM <https://www.youtube.com/watch?v=7o6O9HZ-eeI>`_
   - `Gatan: 4D STEM orientation mapping in DigitalMicrograph with STEMx OIM <https://www.youtube.com/watch?v=LC-Iap8YGqg>`_
   - `IPAM: Colin Ophus - Multi-dimensional scanning transmission electron microscopy to solve 3D nanostructures <https://www.youtube.com/watch?v=Frb4Nl2OJqI>`_
   - `Colin Ophus: New Dimensions in Scanning Transmission Electron Microscopy <https://www.youtube.com/watch?v=_8A21EaP4es>`_
   - `Peng Wang - Electron Ptychography: Emerging Computational Microscopy for Physical/Biological Science <https://youtu.be/T-MAAn6PZWk?si=uYbcg7zoSpjVNKUm>`_

.. dropdown:: Web links
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   - `Gatan: Orientation Mapping <https://www.gatan.com/orientation-mapping>`_
   - `JEOL-IDES <https://ides-inc.com/>`_
   - `Copilot instructions <https://github.blog/ai-and-ml/unlocking-the-full-power-of-copilot-code-review-master-your-instructions-files/>`_
   - `Build agent <https://github.blog/ai-and-ml/github-copilot/how-to-write-a-great-agents-md-lessons-from-over-2500-repositories/>`_


.. dropdown:: Government & Research links
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   - `NSF News <https://www.nsf.gov/news>`_
   - `DOE News <https://www.energy.gov/search?page=1&f%5B0%5D=content_type_rest%3Aarticle>`_

.. dropdown:: VS Code shortcuts


   - ``cmd-U``: Undo last action
   - ``cmd-L``, ``shift-opt-down/up``: Select and duplicate current line
   - ``cmd-L``, ``cmd-shift-L``: Select all occurrences of selection
   - ``cmd-fn2``: Select all matched words
   - ``cmd-fn3`` or ``cmd-shift-fn3``: Select one by one
   - ``cmd-.``: Quick fix
   - ``cmd-opt-[``, ``cmd-opt-]``: Fold/unfold region
   - ``cmd-K cmd-0``, ``cmd-K cmd-J``: Fold/unfold all
   - ``cmd-shift-\``: Jump to matching bracket
   - ``cmd-shift-[``, ``cmd-shift-]``: Switch between editor tabs
   - ``opt-cmd-.``: Choose models
   - ``ctrl-l``: Center view (requires "Center Editor Window" extension)

.. dropdown:: macOS/daily shortcuts

   - ``FN-Q`` Quick note
   - ``F-11`` show desktop
   - ``opt-F2/3/10/`` for brightness, search, sound settings
   - ``fn-F12`` in Browser to show logs


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